Difference between revisions of "Tutorials"
From GenPlay, Einstein Genome Analyzer
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'''Note:''' Here is a version for the comparison of hg18 and hg19: [[Multi-Genome Tutorial]]. | '''Note:''' Here is a version for the comparison of hg18 and hg19: [[Multi-Genome Tutorial]]. | ||
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| + | == How to Create a VCF File From a Chain file == | ||
| + | The goal of this tutorial is to show how to generate a VCF file such as the one used in the [[GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial]] from a Chain file that can be downloaded on the UCSC genome browser website. | ||
Revision as of 15:26, 10 August 2014
The following tutorials aim to give you some of the basic concept on the track manipulation techniques.
Contents
ChIP-Seq Analysis
The objective of the ChIP-Seq Tutorial is to illustrate how GenPlay can be used to isolate peaks from the data generated from a ChIP-Seq experiment.
TimEX Analysis
The TimEX Tutorial illustrates how GenPlay can be used to show timing of replication profiles.
Multi-Genome Analysis
The GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial explains how to use the multi-genome functionality of GenPlay.
It shows how data aligned on hg38 and hg19 can be displayed simultaneously and compared using GenPlay Multi-Genome
Note: Here is a version for the comparison of hg18 and hg19: Multi-Genome Tutorial.
How to Create a VCF File From a Chain file
The goal of this tutorial is to show how to generate a VCF file such as the one used in the GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial from a Chain file that can be downloaded on the UCSC genome browser website.