Difference between revisions of "Tutorials"

From GenPlay, Einstein Genome Analyzer

Jump to: navigation, search
(How to Create a VCF File From a Chain file)
(How to Create a VCF File From a Chain File)
 
Line 15: Line 15:
  
 
== How to Create a VCF File From a Chain File ==
 
== How to Create a VCF File From a Chain File ==
The goal of this [[How to Create a VCF File From a Chain File|tutorial]] is to show how to generate a VCF file such as the one used in the [[GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial]] from a Chain file that can be downloaded from the UCSC genome browser website.
+
The goal of [[How to Create a VCF File From a Chain File|this tutorial]] is to show how to generate a VCF file such as the one used in the [[GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial]] from a Chain file that can be downloaded from the UCSC genome browser website.

Latest revision as of 11:18, 22 August 2014

The following tutorials aim to give you some of the basic concept on the track manipulation techniques.

ChIP-Seq Analysis

The objective of the ChIP-Seq Tutorial is to illustrate how GenPlay can be used to isolate peaks from the data generated from a ChIP-Seq experiment.

TimEX Analysis

The TimEX Tutorial illustrates how GenPlay can be used to show timing of replication profiles.

Multi-Genome Analysis

The GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial explains how to use the multi-genome functionality of GenPlay.

It shows how data aligned on hg38 and hg19 can be displayed simultaneously and compared using GenPlay Multi-Genome

Note: Here is a version for the comparison of hg18 and hg19: Multi-Genome Tutorial.

How to Create a VCF File From a Chain File

The goal of this tutorial is to show how to generate a VCF file such as the one used in the GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial from a Chain file that can be downloaded from the UCSC genome browser website.