From GenPlay, Einstein Genome Analyzer
The following tutorials aim to give you some of the basic concept on the track manipulation techniques.
The objective of the ChIP-Seq Tutorial is to illustrate how GenPlay can be used to isolate peaks from the data generated from a ChIP-Seq experiment.
The TimEX Tutorial illustrates how GenPlay can be used to show timing of replication profiles.
The GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial explains how to use the multi-genome functionality of GenPlay.
It shows how data aligned on hg38 and hg19 can be displayed simultaneously and compared using GenPlay Multi-Genome
Note: Here is a version for the comparison of hg18 and hg19: Multi-Genome Tutorial.
How to Create a VCF File From a Chain File
The goal of this tutorial is to show how to generate a VCF file such as the one used in the GRCh37/hg19 GRCh38/hg38 Multi-Genome Tutorial from a Chain file that can be downloaded from the UCSC genome browser website.