Difference between revisions of "Tutorials"
From GenPlay, Einstein Genome Analyzer
(Created page with "The following tutorials aim to give you some of the basic concept on the track manipulation techniques. The three analysis described are SEA") |
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| − | The following tutorials aim to give you some of the basic concept on the track manipulation techniques. The | + | The following tutorials aim to give you some of the basic concept on the track manipulation techniques. |
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| + | == ChIP-Seq Analysis == | ||
| + | '''Goal:''' First, isolate the peaks from the data generated from a ChIP-Seq experiment. Then generate a list of genes that have a peak in their promoter and associate for each promoter the score of the peak summit. | ||
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| + | === Load the file === | ||
| + | Start by downloading download the file from the tutorial directory here. | ||
| + | You can also the refSeq gene annotation file here. | ||
| + | After that you can start GenPlay from the Web Start link that is located on top of this page. The 1 GB link is enough for this tutorial. | ||
Revision as of 16:02, 14 January 2011
The following tutorials aim to give you some of the basic concept on the track manipulation techniques.
ChIP-Seq Analysis
Goal: First, isolate the peaks from the data generated from a ChIP-Seq experiment. Then generate a list of genes that have a peak in their promoter and associate for each promoter the score of the peak summit.
Load the file
Start by downloading download the file from the tutorial directory here. You can also the refSeq gene annotation file here. After that you can start GenPlay from the Web Start link that is located on top of this page. The 1 GB link is enough for this tutorial.